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分析结果归档

QC(fastp)结果归档

一般情况下，分析结果以sample单位，而QC的最小单位为run，此时需要通过mv ./QC// src_path来规范目录结构。

#规范目录结构
mv /media/root/local_693/test/QC/*/* /media/root/local_693/test/runs/
#去除log等无用信息
rm /media/root/local_693/test/runs/*.log
随后利用/Task/mv_fastp接口归档

{
  "run_list": [
    "*"
  ],
  "src_path": "/media/root/local_693/test/runs",
  "dst_path": "/media/root/local_693/intermediate/fastp",
  "mode": "mv",
  "worker": "storage_cu06_main"
}

srWGS分析结果归档

bam归档

利用/Task/srWGS/mv_bam接口归档即可 

{
  "sample_list": [
    "*"
  ],
  "src_path": "/media/root/local_699/mapping/mapping",
  "dst_path": "/media/root/local_699/intermediate/srWGS/bam",
  "mode": "mv",
  "worker": "storage_cu06_main",
  "genome_label": "ROS_Cfam_1.0_ensembl"
}

gvcf归档

利用/Task/srWGS/mv_gvcf接口归档即可 

{
  "sample_list": [
    "*"
  ],
  "src_path": "/media/root/local_698/calling/calling",
  "dst_path": "/media/root/local_698/intermediate/srWGS/gvcf",
  "mode": "mv",
  "worker": "storage_cu06_main",
  "genome_label": "ROS_Cfam_1.0_ensembl"
}

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Authors: Wind